Select between multiple X509 certificate paths

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We have a web-service that will receive digitally signed prescriptions from prescribers all over the USA. Each digitally signed prescription will contain a certificate and that certificate needs to be cross-certified by Federal Bridge CA. So I assume
that my certificate will have multiple certificate paths. I am using C#.NET 4.0 frameworks X509Chain to validate the chain. As I understand that X509Chain.Build() function will validate the certificate with the highest quality chain. The
problem is that it doesnt specify what path it chose to validate the certificate. Is there any way I can enumerate between multiple chains? Or specify some settings on X509Chain to always validate the certificate on the Federal PKI? I need to
programmatically verify that the certificate is okayed by Federal authority. Can this be done programmatically?
Please advice.

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